H2ZUD5_LATCH protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2ZUD5_LATCH

Uncharacterized protein. (396 aa)

Predicted Functional Partners:

PRPF3

0.751

S100Z

0.641

RNF128

0.641

KCNV2

0.590

SLC30A7

0.565

NDUFAF6

0.549

ADCYAP1

0.547

SLC30A4

0.542

H3ASC2_LATCH

0.536

H3ATX3_LATCH

0.536

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADCYAP1	H2ZUD5_LATCH	ENSLACP00000019064	ENSLACP00000001006	Adenylate cyclase activating polypeptide 1.	Uncharacterized protein.	0.547
ADCYAP1	KCNV2	ENSLACP00000019064	ENSLACP00000009040	Adenylate cyclase activating polypeptide 1.	Potassium voltage-gated channel modifier subfamily V member 2; Belongs to the potassium channel family.	0.593
ADCYAP1	NDUFAF6	ENSLACP00000019064	ENSLACP00000004586	Adenylate cyclase activating polypeptide 1.	NADH:ubiquinone oxidoreductase complex assembly factor 6.	0.565
ADCYAP1	RNF128	ENSLACP00000019064	ENSLACP00000023449	Adenylate cyclase activating polypeptide 1.	Ring finger protein 128.	0.685
ADCYAP1	S100Z	ENSLACP00000019064	ENSLACP00000012564	Adenylate cyclase activating polypeptide 1.	Protein S100; Belongs to the S-100 family.	0.756
H2ZUD5_LATCH	ADCYAP1	ENSLACP00000001006	ENSLACP00000019064	Uncharacterized protein.	Adenylate cyclase activating polypeptide 1.	0.547
H2ZUD5_LATCH	H3ASC2_LATCH	ENSLACP00000001006	ENSLACP00000012543	Uncharacterized protein.	Solute carrier family 30 member 10.	0.536
H2ZUD5_LATCH	H3ATX3_LATCH	ENSLACP00000001006	ENSLACP00000013094	Uncharacterized protein.	Uncharacterized protein.	0.536
H2ZUD5_LATCH	KCNV2	ENSLACP00000001006	ENSLACP00000009040	Uncharacterized protein.	Potassium voltage-gated channel modifier subfamily V member 2; Belongs to the potassium channel family.	0.590
H2ZUD5_LATCH	NDUFAF6	ENSLACP00000001006	ENSLACP00000004586	Uncharacterized protein.	NADH:ubiquinone oxidoreductase complex assembly factor 6.	0.549
H2ZUD5_LATCH	PRPF3	ENSLACP00000001006	ENSLACP00000011977	Uncharacterized protein.	Pre-mRNA processing factor 3.	0.751
H2ZUD5_LATCH	RNF128	ENSLACP00000001006	ENSLACP00000023449	Uncharacterized protein.	Ring finger protein 128.	0.641
H2ZUD5_LATCH	S100Z	ENSLACP00000001006	ENSLACP00000012564	Uncharacterized protein.	Protein S100; Belongs to the S-100 family.	0.641
H2ZUD5_LATCH	SLC30A4	ENSLACP00000001006	ENSLACP00000017774	Uncharacterized protein.	Solute carrier family 30 member 4.	0.542
H2ZUD5_LATCH	SLC30A7	ENSLACP00000001006	ENSLACP00000008568	Uncharacterized protein.	Solute carrier family 30 member 7.	0.565
H3ASC2_LATCH	H2ZUD5_LATCH	ENSLACP00000012543	ENSLACP00000001006	Solute carrier family 30 member 10.	Uncharacterized protein.	0.536
H3ASC2_LATCH	SLC30A4	ENSLACP00000012543	ENSLACP00000017774	Solute carrier family 30 member 10.	Solute carrier family 30 member 4.	0.456
H3ATX3_LATCH	H2ZUD5_LATCH	ENSLACP00000013094	ENSLACP00000001006	Uncharacterized protein.	Uncharacterized protein.	0.536
H3ATX3_LATCH	SLC30A4	ENSLACP00000013094	ENSLACP00000017774	Uncharacterized protein.	Solute carrier family 30 member 4.	0.454
KCNV2	ADCYAP1	ENSLACP00000009040	ENSLACP00000019064	Potassium voltage-gated channel modifier subfamily V member 2; Belongs to the potassium channel family.	Adenylate cyclase activating polypeptide 1.	0.593