Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102358306Uncharacterized protein. (162 aa)    
Predicted Functional Partners:
RALYL
RALY RNA binding protein like.
 
      0.899
HNRNPC
RRM domain-containing protein.
   
   0.748
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.649
EIF2S2
Eukaryotic translation initiation factor 2 subunit beta.
   
 0.554
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.550
HNRNPH1
Uncharacterized protein.
   
 0.537
KHDRBS1
KH RNA binding domain containing, signal transduction associated 1.
   
 
 0.529
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.522
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.505
YBX1
Y-box binding protein 1.
   
 0.505
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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