ARPIN protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ARPIN

Uncharacterized protein. (150 aa)

Predicted Functional Partners:

AP3D1

0.878

AP3B1

0.864

AP3B2

0.864

GAK

0.847

AP3M1

0.790

AP3M2

0.790

AP4E1

0.771

AP1G1

0.763

AP1G2

0.763

DNAJC6

0.700

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP1G1	AP1G2	ENSLACP00000010241	ENSLACP00000015022	AP-1 complex subunit gamma.	AP-1 complex subunit gamma.	0.902
AP1G1	AP3B1	ENSLACP00000010241	ENSLACP00000018700	AP-1 complex subunit gamma.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.841
AP1G1	AP3B2	ENSLACP00000010241	ENSLACP00000018961	AP-1 complex subunit gamma.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.841
AP1G1	AP3D1	ENSLACP00000010241	ENSLACP00000011865	AP-1 complex subunit gamma.	Adaptor related protein complex 3 subunit delta 1.	0.553
AP1G1	AP3M1	ENSLACP00000010241	ENSLACP00000004493	AP-1 complex subunit gamma.	Adaptor related protein complex 3 subunit mu 1.	0.702
AP1G1	AP3M2	ENSLACP00000010241	ENSLACP00000014766	AP-1 complex subunit gamma.	AP-3 complex subunit mu-2.	0.702
AP1G1	AP4E1	ENSLACP00000010241	ENSLACP00000007967	AP-1 complex subunit gamma.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.536
AP1G1	ARPIN	ENSLACP00000010241	ENSLACP00000001014	AP-1 complex subunit gamma.	Uncharacterized protein.	0.763
AP1G1	DNAJC6	ENSLACP00000010241	ENSLACP00000004567	AP-1 complex subunit gamma.	DnaJ heat shock protein family (Hsp40) member C6.	0.705
AP1G1	GAK	ENSLACP00000010241	ENSLACP00000006296	AP-1 complex subunit gamma.	J domain-containing protein.	0.915
AP1G2	AP1G1	ENSLACP00000015022	ENSLACP00000010241	AP-1 complex subunit gamma.	AP-1 complex subunit gamma.	0.902
AP1G2	AP3B1	ENSLACP00000015022	ENSLACP00000018700	AP-1 complex subunit gamma.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.841
AP1G2	AP3B2	ENSLACP00000015022	ENSLACP00000018961	AP-1 complex subunit gamma.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.841
AP1G2	AP3D1	ENSLACP00000015022	ENSLACP00000011865	AP-1 complex subunit gamma.	Adaptor related protein complex 3 subunit delta 1.	0.553
AP1G2	AP3M1	ENSLACP00000015022	ENSLACP00000004493	AP-1 complex subunit gamma.	Adaptor related protein complex 3 subunit mu 1.	0.702
AP1G2	AP3M2	ENSLACP00000015022	ENSLACP00000014766	AP-1 complex subunit gamma.	AP-3 complex subunit mu-2.	0.702
AP1G2	AP4E1	ENSLACP00000015022	ENSLACP00000007967	AP-1 complex subunit gamma.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.536
AP1G2	ARPIN	ENSLACP00000015022	ENSLACP00000001014	AP-1 complex subunit gamma.	Uncharacterized protein.	0.763
AP1G2	DNAJC6	ENSLACP00000015022	ENSLACP00000004567	AP-1 complex subunit gamma.	DnaJ heat shock protein family (Hsp40) member C6.	0.705
AP1G2	GAK	ENSLACP00000015022	ENSLACP00000006296	AP-1 complex subunit gamma.	J domain-containing protein.	0.915