STRINGSTRING
SDR42E2 protein (Latimeria chalumnae) - STRING interaction network
"SDR42E2" - Short chain dehydrogenase/reductase family 42E, member 2 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR42E2Short chain dehydrogenase/reductase family 42E, member 2 (204 aa)    
Predicted Functional Partners:
FDFT1
Farnesyl-diphosphate farnesyltransferase 1 (416 aa)
     
 
  0.881
C14orf1
Chromosome 14 open reading frame 1 (143 aa)
     
 
  0.817
ENSLACG00000013323
Uncharacterized protein (433 aa)
     
  0.808
ENSLACG00000012992
Uncharacterized protein (552 aa)
     
  0.808
ENSLACG00000012175
Uncharacterized protein (566 aa)
     
  0.808
ENSLACG00000011395
Squalene monooxygenase (479 aa)
     
  0.808
SQLE
Squalene epoxidase (506 aa)
     
  0.808
HSD17B7
Hydroxysteroid (17-beta) dehydrogenase 7 (330 aa)
     
 
  0.808
SC5DL
sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like (299 aa)
     
 
  0.789
AGMO
Alkylglycerol monooxygenase (150 aa)
     
 
  0.789
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
Server load: low (9%) [HD]