STRINGSTRING
DDRGK1 protein (Latimeria chalumnae) - STRING interaction network
"DDRGK1" - DDRGK domain containing 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDRGK1DDRGK domain containing 1 (243 aa)    
Predicted Functional Partners:
CDK5RAP3
CDK5 regulatory subunit associated protein 3 (519 aa)
     
 
  0.964
UFL1
UFM1-specific ligase 1 (792 aa)
     
 
  0.912
SRPR
Signal recognition particle receptor (docking protein) (639 aa)
       
      0.590
UFSP2
UFM1-specific peptidase 2 (473 aa)
           
  0.583
UBA5
Ubiquitin-like modifier activating enzyme 5 (407 aa)
     
   
  0.508
UFM1
Ubiquitin-fold modifier 1 (74 aa)
           
  0.470
UFSP1
UFM1-specific peptidase 1 (non-functional) (223 aa)
           
  0.404
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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