STRINGSTRING
CCDC171 protein (Latimeria chalumnae) - STRING interaction network
"CCDC171" - Coiled-coil domain containing 171 in Latimeria chalumnae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC171Coiled-coil domain containing 171 (1275 aa)    
Predicted Functional Partners:
SNAPC3
Small nuclear RNA activating complex, polypeptide 3, 50kDa (219 aa)
           
  0.601
TTC39B
Tetratricopeptide repeat domain 39B (559 aa)
           
  0.570
TTC39A
Tetratricopeptide repeat domain 39A (557 aa)
           
  0.570
FRMD5
FERM domain containing 5 (544 aa)
           
  0.531
FRMD3
FERM domain containing 3 (552 aa)
           
  0.531
ENSLACG00000015276
Uncharacterized protein (426 aa)
           
  0.499
LURAP1L
Leucine rich adaptor protein 1-like (127 aa)
           
  0.489
ENSLACG00000014082
Uncharacterized protein (744 aa)
           
  0.482
RASEF
RAS and EF-hand domain containing (709 aa)
           
  0.482
ENSLACG00000010914
Uncharacterized protein (131 aa)
           
  0.444
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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