Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2ZUG1_LATCHUncharacterized protein. (125 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 
 0.737
FGFR1OP
FGFR1 oncogene partner.
    
   0.725
UBR5
Ubiquitin protein ligase E3 component n-recognin 5.
    
 
 0.705
DCAF1
DDB1 and CUL4 associated factor 1.
    
 
 0.702
CEP290
Centrosomal protein 290.
    
 0.666
LOC102364679
Centrin 4.
    
 0.646
H3AUH3_LATCH
Uncharacterized protein.
    
 0.623
WDR90
WD repeat domain 90.
   
 0.557
WDR63
WD repeat domain 63.
    
 0.531
BORA
BORA aurora kinase A activator.
     
  0.525
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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