Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
H2ZUG6_LATCHCalponin-homology (CH) domain-containing protein. (612 aa)    
Predicted Functional Partners:
DOCK8
Dedicator of cytokinesis 8; Belongs to the DOCK family.
   
 
 0.590
PPARGC1A
PPARG coactivator 1 alpha.
    
 
 0.510
LUM
Lumican.
  
     0.508
LOC102359163
Uncharacterized protein.
  
   
 0.508
OMD
Osteomodulin.
  
     0.507
KERA
Keratocan.
  
     0.498
LRRTM4
Leucine rich repeat transmembrane neuronal 4.
  
     0.482
DOCK7
Dedicator of cytokinesis 7; Belongs to the DOCK family.
    
 
 0.474
DOCK6
Dedicator of cytokinesis 6; Belongs to the DOCK family.
    
 
 0.474
H3A9P1_LATCH
Wu:fc23c09.
  
     0.472
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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