SLC38A1 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC38A1

Solute carrier family 38 member 1. (410 aa)

Predicted Functional Partners:

RRAGB

0.619

LAMTOR2

0.577

RIMS2

0.542

RIMS2-2

0.542

H3AXK0_LATCH

0.537

LAMTOR5

0.528

LAMTOR4

0.502

RRAGC

0.451

RRAGD

0.451

SLC38A9

0.418

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3AXK0_LATCH	LAMTOR2	ENSLACP00000014371	ENSLACP00000012406	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
H3AXK0_LATCH	LAMTOR4	ENSLACP00000014371	ENSLACP00000004196	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.999
H3AXK0_LATCH	LAMTOR5	ENSLACP00000014371	ENSLACP00000020960	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
H3AXK0_LATCH	RRAGB	ENSLACP00000014371	ENSLACP00000018240	Uncharacterized protein.	Ras-related GTP binding A.	0.972
H3AXK0_LATCH	RRAGC	ENSLACP00000014371	ENSLACP00000009958	Uncharacterized protein.	Ras related GTP binding C.	0.934
H3AXK0_LATCH	RRAGD	ENSLACP00000014371	ENSLACP00000010597	Uncharacterized protein.	Ras related GTP binding D.	0.934
H3AXK0_LATCH	SLC38A1	ENSLACP00000014371	ENSLACP00000001060	Uncharacterized protein.	Solute carrier family 38 member 1.	0.537
H3AXK0_LATCH	SLC38A9	ENSLACP00000014371	ENSLACP00000006212	Uncharacterized protein.	Solute carrier family 38 member 9.	0.997
LAMTOR2	H3AXK0_LATCH	ENSLACP00000012406	ENSLACP00000014371	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Uncharacterized protein.	0.999
LAMTOR2	LAMTOR4	ENSLACP00000012406	ENSLACP00000004196	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.999
LAMTOR2	LAMTOR5	ENSLACP00000012406	ENSLACP00000020960	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
LAMTOR2	RRAGB	ENSLACP00000012406	ENSLACP00000018240	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Ras-related GTP binding A.	0.999
LAMTOR2	RRAGC	ENSLACP00000012406	ENSLACP00000009958	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Ras related GTP binding C.	0.948
LAMTOR2	RRAGD	ENSLACP00000012406	ENSLACP00000010597	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Ras related GTP binding D.	0.994
LAMTOR2	SLC38A1	ENSLACP00000012406	ENSLACP00000001060	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Solute carrier family 38 member 1.	0.577
LAMTOR2	SLC38A9	ENSLACP00000012406	ENSLACP00000006212	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Solute carrier family 38 member 9.	0.999
LAMTOR4	H3AXK0_LATCH	ENSLACP00000004196	ENSLACP00000014371	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Uncharacterized protein.	0.999
LAMTOR4	LAMTOR2	ENSLACP00000004196	ENSLACP00000012406	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
LAMTOR4	LAMTOR5	ENSLACP00000004196	ENSLACP00000020960	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
LAMTOR4	RRAGB	ENSLACP00000004196	ENSLACP00000018240	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Ras-related GTP binding A.	0.995