Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COLCA2Uncharacterized protein. (190 aa)    
Predicted Functional Partners:
POU2F3
POU domain protein.
    
 
 0.832
C11orf53
Chromosome 11 open reading frame 53.
      
 0.766
RLF
Rearranged L-myc fusion.
      
 0.742
WBP1L
WW domain binding protein 1 like.
      
 0.701
H3AV84_LATCH
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.658
BTG4
BTG anti-proliferation factor 4.
      
 0.514
ZC3H12C
Zinc finger CCCH-type containing 12C.
      
 0.510
CENPM
Uncharacterized protein.
      
 0.506
HIGD1A
HIG1 hypoxia inducible domain family member 1A.
      
 0.499
SMC3
Structural maintenance of chromosomes protein.
      
 0.499
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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