STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLCA2Uncharacterized protein. (190 aa)    
Predicted Functional Partners:
C11orf53
Chromosome 11 open reading frame 53.
      
 0.780
H3AV84_LATCH
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.652
WBP1L
WW domain binding protein 1 like.
      
 0.565
RLF
Rearranged L-myc fusion.
      
 0.562
HIGD1A
HIG1 hypoxia inducible domain family member 1A.
      
 0.531
SMC3
Structural maintenance of chromosomes protein.
      
 0.504
RAD21
RAD21 cohesin complex component.
      
 0.501
SYCE3
Synaptonemal complex central element protein 3.
  
     0.433
CABLES2
Cdk5 and Abl enzyme substrate 2.
      
 0.431
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.