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UBR1 protein (Latimeria chalumnae) - STRING interaction network
"UBR1" - Ubiquitin protein ligase E3 component n-recognin 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBR1Ubiquitin protein ligase E3 component n-recognin 1 (1724 aa)    
Predicted Functional Partners:
ENSLACG00000006419
Uncharacterized protein (152 aa)
     
  0.954
UBE2B
Ubiquitin-conjugating enzyme E2B (152 aa)
     
  0.954
UBE2A
Ubiquitin-conjugating enzyme E2A (152 aa)
     
  0.954
UBE2U
Ubiquitin-conjugating enzyme E2U (putative) (337 aa)
     
  0.926
TRIP12
Thyroid hormone receptor interactor 12 (2023 aa)
     
  0.878
PFAS
Phosphoribosylformylglycinamidine synthase (1082 aa)
       
      0.802
UBA52
Uncharacterized protein (128 aa)
     
  0.780
UBE2R2
Ubiquitin-conjugating enzyme E2R 2 (238 aa)
     
  0.751
CDC34
Cell division cycle 34 homolog (S. cerevisiae) (241 aa)
     
  0.751
MIB1
Mindbomb E3 ubiquitin protein ligase 1 (989 aa)
     
 
  0.750
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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