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SMG7 protein (Latimeria chalumnae) - STRING interaction network
"SMG7" - Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG7Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) (1197 aa)    
Predicted Functional Partners:
UPF1
UPF1 regulator of nonsense transcripts homolog (yeast) (697 aa)
     
  0.919
C4orf21
Chromosome 4 open reading frame 21 (555 aa)
     
  0.838
UPF3B
UPF3 regulator of nonsense transcripts homolog B (yeast) (470 aa)
         
  0.806
RBM8A
RNA binding motif protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs (177 aa)
       
  0.804
SMG8
SMG8 nonsense mediated mRNA decay factor (913 aa)
     
 
  0.792
UPF2
UPF2 regulator of nonsense transcripts homolog (yeast) (1273 aa)
     
 
  0.790
UPF3A
UPF3 regulator of nonsense transcripts homolog A (yeast) (332 aa)
     
 
  0.764
ENSLACG00000014159
Uncharacterized protein (106 aa)
     
  0.763
SMG1
SMG1 phosphatidylinositol 3-kinase-related kinase (3451 aa)
     
  0.743
SMG9
Smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) (519 aa)
         
  0.725
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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