Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GOLM1Uncharacterized protein. (402 aa)    
Predicted Functional Partners:
DAND5
CTCK domain-containing protein.
   
  
 0.740
RAB3D
RAB3D, member RAS oncogene family.
   
 
 0.727
GALNT2
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.713
AP5Z1
Adaptor related protein complex 5 subunit zeta 1.
     
 0.669
LOC102358218
Tetraspanin.
   
  
 0.650
RAB9B
RAB9B, member RAS oncogene family.
   
  
 0.646
CKAP4
Cytoskeleton associated protein 4.
      
 0.612
SLC35B2
Solute carrier family 35 member B2.
   
  
 0.610
NCLN
Nicalin.
      
 0.592
FAM3C
Family with sequence similarity 3 member C.
      
 0.588
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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