Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLRN1Clarin 1. (232 aa)    
Predicted Functional Partners:
USH1G
USH1 protein network component sans.
      
 0.792
TNKS
Poly [ADP-ribose] polymerase.
      
 0.731
CIB2
Calcium and integrin binding family member 2.
      
 0.641
USH1C
USH1 protein network component harmonin.
      
 0.641
H3A478_LATCH
PDZ domain-containing protein.
      
 0.557
H3AIG1_LATCH
Uncharacterized protein.
      
 0.557
WDR5B
WD repeat domain 5B.
      
 0.545
ANKS4B
Ankyrin repeat and sterile alpha motif domain containing 4B.
      
 0.528
CIB3
Calcium and integrin binding family member 3.
      
 0.528
ABHD12B
Hydrolase_4 domain-containing protein.
      
 0.522
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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