STRINGSTRING
CLRN1 protein (Latimeria chalumnae) - STRING interaction network
"CLRN1" - Clarin 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLRN1Clarin 1 (232 aa)    
Predicted Functional Partners:
MED12
Mediator complex subunit 12 (2199 aa)
           
  0.535
MED12L
Mediator complex subunit 12-like (2154 aa)
           
  0.535
USH2A
Usher syndrome 2A (autosomal recessive, mild) (1471 aa)
           
  0.510
ENSLACG00000004139
Uncharacterized protein (2030 aa)
           
  0.510
PCDH15
Protocadherin-related 15 (1123 aa)
           
  0.503
ABHD12B
Abhydrolase domain containing 12B (367 aa)
     
   
  0.470
PFN2
Profilin 2 (140 aa)
           
  0.465
CIB2
Calcium and integrin binding family member 2 (161 aa)
           
  0.459
ENSLACG00000011811
Uncharacterized protein (1752 aa)
           
  0.454
ENSLACG00000009670
Uncharacterized protein (479 aa)
           
  0.454
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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