• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
CLRN1 protein (Latimeria chalumnae) - STRING interaction network
"CLRN1" - Clarin 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLRN1Clarin 1 (232 aa)    
Predicted Functional Partners:
USH1C
USH1 protein network component harmonin; Usher syndrome 1C (autosomal recessive, severe) (830 aa)
           
  0.894
ENSLACG00000000869
annotation not available (505 aa)
           
  0.808
USH1G
USH1 protein network component sans; Usher syndrome 1G (autosomal recessive) (471 aa)
           
  0.794
CIB2
Calcium and integrin binding family member 2 (161 aa)
           
  0.790
PCDH15
Uncharacterized protein; Protocadherin-related 15 (249 aa)
           
  0.781
ADGRV1
G protein-coupled receptor 98 (5847 aa)
           
  0.781
USH2A
Uncharacterized protein; Usher syndrome 2A (autosomal recessive, mild) (1471 aa)
           
  0.647
PDZD7
Uncharacterized protein; PDZ domain containing 7 (317 aa)
           
  0.647
ENSLACG00000004139
annotation not available (2030 aa)
           
  0.647
DFNB31
Uncharacterized protein; Deafness, autosomal recessive 31 (297 aa)
           
  0.647
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
Server load: low (16%) [HD]