Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPL38Mitochondrial ribosomal protein L38. (406 aa)    
Predicted Functional Partners:
MRPL58
Mitochondrial ribosomal protein L58.
   
 
 0.951
MRPL40
Mitochondrial ribosomal protein L40.
   
 
 0.948
MRPL52
Mitochondrial ribosomal protein L52.
   
 
 0.940
MRPL18
Mitochondrial ribosomal protein L18.
   
   0.926
MRPL48
Mitochondrial ribosomal protein L48.
   
 
 0.925
MRPL13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.904
MRPL16
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.900
MRPL46
Mitochondrial ribosomal protein L46.
   
 
 0.897
MRPS9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.874
MRPL4
Mitochondrial ribosomal protein L4.
   
 
 0.866
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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