STRINGSTRING
ZMAT2 protein (Latimeria chalumnae) - STRING interaction network
"ZMAT2" - Zinc finger, matrin-type 2 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMAT2Zinc finger, matrin-type 2 (199 aa)    
Predicted Functional Partners:
LSM6
LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) (80 aa)
     
 
  0.932
LSM2
LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) (95 aa)
     
 
  0.928
SF3A3
Splicing factor 3a, subunit 3, 60kDa (354 aa)
     
 
  0.898
LSM4
LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) (140 aa)
     
 
  0.814
TXNL4A
Thioredoxin-like 4A (105 aa)
       
 
  0.808
LSM7
LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) (103 aa)
     
 
  0.799
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide 18kDa (126 aa)
     
 
  0.799
PRPF31
PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae) (496 aa)
     
 
  0.798
SF3B3
Splicing factor 3b, subunit 3, 130kDa (1205 aa)
       
 
  0.794
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide 16kDa (121 aa)
     
 
  0.794
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
Server load: low (7%) [HD]