ZMAT2 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ZMAT2

Zinc finger matrin-type 2. (199 aa)

Predicted Functional Partners:

MFAP1

0.987

SART1

0.977

LSM7

0.971

WBP4

0.963

LSM8

0.960

PRPF3

0.959

TCERG1

0.958

SMU1

0.956

PRPF31

0.955

EFTUD2

0.955

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTUD2	LSM7	ENSLACP00000014679	ENSLACP00000017825	Elongation factor Tu GTP binding domain containing 2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.956
EFTUD2	LSM8	ENSLACP00000014679	ENSLACP00000011624	Elongation factor Tu GTP binding domain containing 2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.966
EFTUD2	MFAP1	ENSLACP00000014679	ENSLACP00000016991	Elongation factor Tu GTP binding domain containing 2.	Microfibril associated protein 1.	0.885
EFTUD2	PRPF3	ENSLACP00000014679	ENSLACP00000011977	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 3.	0.984
EFTUD2	PRPF31	ENSLACP00000014679	ENSLACP00000010732	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 31.	0.992
EFTUD2	SART1	ENSLACP00000014679	ENSLACP00000012672	Elongation factor Tu GTP binding domain containing 2.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.994
EFTUD2	SMU1	ENSLACP00000014679	ENSLACP00000005329	Elongation factor Tu GTP binding domain containing 2.	SMU1 DNA replication regulator and spliceosomal factor.	0.675
EFTUD2	TCERG1	ENSLACP00000014679	ENSLACP00000007469	Elongation factor Tu GTP binding domain containing 2.	Transcription elongation regulator 1.	0.886
EFTUD2	WBP4	ENSLACP00000014679	ENSLACP00000009933	Elongation factor Tu GTP binding domain containing 2.	WW domain binding protein 4.	0.650
EFTUD2	ZMAT2	ENSLACP00000014679	ENSLACP00000001150	Elongation factor Tu GTP binding domain containing 2.	Zinc finger matrin-type 2.	0.955
LSM7	EFTUD2	ENSLACP00000017825	ENSLACP00000014679	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Elongation factor Tu GTP binding domain containing 2.	0.956
LSM7	LSM8	ENSLACP00000017825	ENSLACP00000011624	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM7	MFAP1	ENSLACP00000017825	ENSLACP00000016991	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Microfibril associated protein 1.	0.700
LSM7	PRPF3	ENSLACP00000017825	ENSLACP00000011977	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Pre-mRNA processing factor 3.	0.955
LSM7	PRPF31	ENSLACP00000017825	ENSLACP00000010732	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Pre-mRNA processing factor 31.	0.945
LSM7	SART1	ENSLACP00000017825	ENSLACP00000012672	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.968
LSM7	SMU1	ENSLACP00000017825	ENSLACP00000005329	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	SMU1 DNA replication regulator and spliceosomal factor.	0.709
LSM7	TCERG1	ENSLACP00000017825	ENSLACP00000007469	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Transcription elongation regulator 1.	0.641
LSM7	WBP4	ENSLACP00000017825	ENSLACP00000009933	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	WW domain binding protein 4.	0.688
LSM7	ZMAT2	ENSLACP00000017825	ENSLACP00000001150	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Zinc finger matrin-type 2.	0.971