STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3F3BHistone H3; Belongs to the histone H3 family. (136 aa)    
Predicted Functional Partners:
H4C11
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
 
 
 0.978
KDM6B
Lysine demethylase 6B.
   
 0.949
KDM6A
Lysine (K)-specific demethylase 6A.
   
 0.940
ARID4A
AT-rich interaction domain 4A.
   
 0.898
H3A5E7_LATCH
Histone H2B; Belongs to the histone H2B family.
 
 
 0.864
H2ZS39_LATCH
Histone H2B; Belongs to the histone H2B family.
 
 
 0.855
H3A427_LATCH
Histone H2B; Belongs to the histone H2B family.
 
 
 0.854
H3A2S8_LATCH
Histone H2B; Belongs to the histone H2B family.
 
 
 0.853
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.853
H2ZZP4_LATCH
Histone H2B; Belongs to the histone H2B family.
 
 
 0.852
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.