STRINGSTRING
GPC1 protein (Latimeria chalumnae) - STRING interaction network
"GPC1" - Glypican 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPC1Glypican 1; Cell surface proteoglycan that bears heparan sulfate (552 aa)    
Predicted Functional Partners:
EXT2
Exostosin 2 (718 aa)
     
 
  0.754
EXT1
Exostosin 1 (447 aa)
     
 
  0.754
EXTL1
Exostoses (multiple)-like 1 (739 aa)
     
 
  0.754
SDC2
Syndecan 2; Cell surface proteoglycan (209 aa)
     
 
  0.752
NDST4
Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 (876 aa)
       
  0.719
NDST2
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 (880 aa)
       
  0.719
NDST3
Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 (876 aa)
       
  0.719
HSPG2
Heparan sulfate proteoglycan 2 (2595 aa)
     
 
  0.705
GPC3
Glypican 3; Cell surface proteoglycan that bears heparan sulfate (270 aa)
     
0.690
HS6ST2
Heparan sulfate 6-O-sulfotransferase 2 (240 aa)
     
 
  0.689
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
Server load: low (16%) [HD]