STRINGSTRING
GPC1 protein (Latimeria chalumnae) - STRING interaction network
"GPC1" - Glypican 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPC1Glypican 1; Cell surface proteoglycan that bears heparan sulfate (552 aa)    
Predicted Functional Partners:
HSPG2
Heparan sulfate proteoglycan 2 (2595 aa)
     
   
  0.668
SDC4
Syndecan; Cell surface proteoglycan (196 aa)
     
   
  0.653
FGF2
Fibroblast growth factor 2 (basic); Belongs to the heparin-binding growth factors family (155 aa)
     
 
  0.652
SDC3
Syndecan; Cell surface proteoglycan (416 aa)
     
   
  0.642
SDC2
Syndecan; Cell surface proteoglycan (209 aa)
     
   
  0.641
NOTUM
NOTUM, palmitoleoyl-protein carboxylesterase; Notum pectinacetylesterase 1a (506 aa)
       
 
  0.621
COL18A1
Collagen type XVIII, alpha 1 (1308 aa)
     
 
  0.613
LRRTM3
Leucine rich repeat transmembrane neuronal 3 (514 aa)
       
 
  0.595
CTNNA3
Catenin (cadherin-associated protein), alpha 3 (213 aa)
     
   
  0.579
LRRTM2
Leucine rich repeat transmembrane neuronal 2 (522 aa)
       
 
  0.571
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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