STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1SUB1 regulator of transcription. (65 aa)    
Predicted Functional Partners:
SYMPK
Symplekin.
    
 
 0.887
GTF2B
General transcription factor IIB.
   
 
 0.827
SUPT5H
Transcription elongation factor SPT5.
    
 
 0.787
CNBP
CCHC-type zinc finger, nucleic acid binding protein b.
   
 
 0.732
POLR2C
RNA polymerase II subunit C.
   
 
 0.700
GTF3C1
General transcription factor IIIC subunit 1.
    
 
 0.691
TMEM51
Transmembrane protein 51.
      
 0.658
H2ZXZ8_LATCH
Uncharacterized protein.
      
 0.658
POMP
Proteasome maturation protein.
   
  
 0.654
LOC102352539
Uncharacterized protein.
    
 
 0.653
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.