STRINGSTRING
SUB1 protein (Latimeria chalumnae) - STRING interaction network
SUB1 homolog (S. cerevisiae) in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1SUB1 homolog (S. cerevisiae) (65 aa)    
Predicted Functional Partners:
SYMPK
Symplekin (1203 aa)
       
 
  0.834
SUPT5H
Suppressor of Ty 5 homolog (S. cerevisiae) (1081 aa)
       
 
  0.753
SRRM2
Serine/arginine repetitive matrix 2 (909 aa)
       
      0.662
ARGLU1
Arginine and glutamate rich 1 (276 aa)
     
      0.608
SRRM3
Serine/arginine repetitive matrix 3 (594 aa)
       
      0.591
DDX41
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 (618 aa)
       
      0.588
LSM5
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (91 aa)
     
        0.546
GTF2B
General transcription factor IIB (316 aa)
     
 
  0.535
SSU72
SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) (194 aa)
     
   
  0.497
TBPL2
TATA box binding protein like 2 (344 aa)
     
 
  0.484
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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