Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB34RAB34, member RAS oncogene family. (259 aa)    
Predicted Functional Partners:
VPS53
VPS53 subunit of GARP complex.
    
 0.845
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
   
 0.819
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.815
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.813
ARL1
ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.
   
 0.767
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.765
COG6-2
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.765
RGP1
RGP1 homolog, RAB6A GEF complex partner 1.
    
 0.764
VPS52
VPS52 subunit of GARP complex.
    
 0.752
RILPL2
Rab interacting lysosomal protein like 2.
      
 0.700
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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