APMAP protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

APMAP

Adipocyte plasma membrane associated protein. (415 aa)

Predicted Functional Partners:

FDXACB1

0.759

TSFM

0.691

EXOSC10

0.671

MTIF2

0.668

EIF5B

0.668

MRPL20

0.667

SUPV3L1

0.665

TTC5

0.651

CTPS1

0.651

MRPL17

0.639

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APMAP	CTPS1	ENSLACP00000001206	ENSLACP00000016253	Adipocyte plasma membrane associated protein.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.651
APMAP	EIF5B	ENSLACP00000001206	ENSLACP00000013275	Adipocyte plasma membrane associated protein.	Eukaryotic translation initiation factor 5B.	0.668
APMAP	EXOSC10	ENSLACP00000001206	ENSLACP00000018972	Adipocyte plasma membrane associated protein.	Exosome component 10.	0.671
APMAP	FDXACB1	ENSLACP00000001206	ENSLACP00000021375	Adipocyte plasma membrane associated protein.	Ferredoxin-fold anticodon binding domain containing 1.	0.759
APMAP	MRPL17	ENSLACP00000001206	ENSLACP00000017389	Adipocyte plasma membrane associated protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.639
APMAP	MRPL20	ENSLACP00000001206	ENSLACP00000021790	Adipocyte plasma membrane associated protein.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.667
APMAP	MTIF2	ENSLACP00000001206	ENSLACP00000008087	Adipocyte plasma membrane associated protein.	Mitochondrial translational initiation factor 2.	0.668
APMAP	SUPV3L1	ENSLACP00000001206	ENSLACP00000009095	Adipocyte plasma membrane associated protein.	Suv3 like RNA helicase.	0.665
APMAP	TSFM	ENSLACP00000001206	ENSLACP00000020627	Adipocyte plasma membrane associated protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.691
APMAP	TTC5	ENSLACP00000001206	ENSLACP00000008191	Adipocyte plasma membrane associated protein.	Tetratricopeptide repeat domain 5.	0.651
CTPS1	APMAP	ENSLACP00000016253	ENSLACP00000001206	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Adipocyte plasma membrane associated protein.	0.651
CTPS1	EIF5B	ENSLACP00000016253	ENSLACP00000013275	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Eukaryotic translation initiation factor 5B.	0.548
CTPS1	FDXACB1	ENSLACP00000016253	ENSLACP00000021375	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Ferredoxin-fold anticodon binding domain containing 1.	0.438
CTPS1	MRPL20	ENSLACP00000016253	ENSLACP00000021790	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.434
CTPS1	MTIF2	ENSLACP00000016253	ENSLACP00000008087	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Mitochondrial translational initiation factor 2.	0.541
CTPS1	TSFM	ENSLACP00000016253	ENSLACP00000020627	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.517
EIF5B	APMAP	ENSLACP00000013275	ENSLACP00000001206	Eukaryotic translation initiation factor 5B.	Adipocyte plasma membrane associated protein.	0.668
EIF5B	CTPS1	ENSLACP00000013275	ENSLACP00000016253	Eukaryotic translation initiation factor 5B.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.548
EIF5B	MRPL17	ENSLACP00000013275	ENSLACP00000017389	Eukaryotic translation initiation factor 5B.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.795
EIF5B	MRPL20	ENSLACP00000013275	ENSLACP00000021790	Eukaryotic translation initiation factor 5B.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.703