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STRINGSTRING
SRRT protein (Latimeria chalumnae) - STRING interaction network
"SRRT" - Serrate, RNA effector molecule in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRTSerrate, RNA effector molecule (832 aa)    
Predicted Functional Partners:
NCBP1
Nuclear cap binding protein subunit 1, 80kDa (804 aa)
     
 
  0.951
ALYREF
Aly/REF export factor (258 aa)
     
 
  0.945
DICER1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily (1923 aa)
     
 
  0.853
CTNNBL1
Catenin, beta like 1 (563 aa)
     
        0.849
NCBP2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5’ cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense-mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5’ end of mRNA and to mRNA export in a 5’ to 3’ direction through the nuclear pore. The CBC complex is also involved in mediating U s [...] (164 aa)
     
 
  0.802
ENSLACG00000015184
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5’ cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense-mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5’ end of mRNA and to mRNA export in a 5’ to 3’ direction through the nuclear pore. The CBC complex is also involved in mediating U s [...] (156 aa)
     
 
  0.802
FAU
40S ribosomal protein S30; Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a; Belongs to the eukaryotic ribosomal protein eS30 family (133 aa)
       
 
  0.791
DROSHA
Drosha, ribonuclease type III (1347 aa)
     
 
  0.788
PHAX
Phosphorylated adaptor for RNA export (404 aa)
     
   
  0.766
SKIV2L2
Ski2 like RNA helicase 2; Superkiller viralicidic activity 2-like 2 (S. cerevisiae) (1031 aa)
     
 
  0.738
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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