STRINGSTRING
SRRT protein (Latimeria chalumnae) - STRING interaction network
"SRRT" - Serrate RNA effector molecule homolog in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRTSerrate RNA effector molecule homolog (Arabidopsis) (832 aa)    
Predicted Functional Partners:
DICER1
Dicer 1, ribonuclease type III (1923 aa)
     
 
  0.821
NCBP1
Nuclear cap binding protein subunit 1, 80kDa (804 aa)
     
  0.821
SF3A2
Splicing factor 3a, subunit 2, 66kDa (313 aa)
     
    0.753
NCBP2
Nuclear cap binding protein subunit 2, 20kDa (164 aa)
     
  0.742
ALYREF
Aly/REF export factor (258 aa)
     
  0.703
PHAX
Phosphorylated adaptor for RNA export (404 aa)
     
 
  0.699
ENSLACG00000015184
Uncharacterized protein (156 aa)
     
  0.694
DROSHA
Drosha, ribonuclease type III (1347 aa)
     
 
  0.663
YTHDC2
YTH domain containing 2 (1429 aa)
     
    0.624
PLRG1
Pleiotropic regulator 1 (514 aa)
     
    0.573
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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