Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2ZV03_LATCHUncharacterized protein; Belongs to the TUB family. (512 aa)    
Predicted Functional Partners:
IFT140
Intraflagellar transport 140.
    
 0.862
TTC21B
Tetratricopeptide repeat domain 21B.
    
 0.829
IFT122
Intraflagellar transport 122.
    
 0.820
WDR19
WD repeat domain 19.
    
 0.799
WDR35
WD repeat-containing protein 35.
    
 0.750
LOC102349115
WD_REPEATS_REGION domain-containing protein.
    
 0.667
IFT43
Uncharacterized protein.
    
 
 0.639
TTC21A
Tetratricopeptide repeat domain 21A.
    
 0.617
H3AHE4_LATCH
Uncharacterized protein.
      
 0.588
H2ZX25_LATCH
ANK_REP_REGION domain-containing protein.
    
   0.568
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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