STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102353252Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (643 aa)    
Predicted Functional Partners:
CAPNS1
Calpain small subunit 1.
 
 
 0.868
LOC102356340
Uncharacterized protein.
   
 0.648
ITSN2
Intersectin 2.
   
 
  0.635
CTSC
Cathepsin C; Belongs to the peptidase C1 family.
   
 
 0.569
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
   
 
 0.505
PDCD6
Programmed cell death 6.
   
 0.469
PEF1
Penta-EF-hand domain containing 1.
   
 0.469
LOC102351466
Uncharacterized protein.
   
 0.460
GCA
Grancalcin.
   
 0.460
SRFBP1
Serum response factor binding protein 1.
      
 0.418
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.