STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2ZV36_LATCHUncharacterized protein. (134 aa)    
Predicted Functional Partners:
CXorf38
Chromosome X open reading frame 38.
    
 
 0.784
PPIL4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
      
 0.737
RBM7
RRM domain-containing protein.
      
 0.641
TMEM243
Transmembrane protein 243.
      
 0.577
USP11
Ubiquitin specific peptidase 11.
      
 0.535
SPAG1
Sperm associated antigen 1.
    
 
 0.509
WDR81
WD repeat domain 81.
      
 0.472
PJA2
Uncharacterized protein.
      
 0.467
MID1IP1
MID1 interacting protein 1.
      
 0.467
HBS1L
HBS1 like translational GTPase.
      
 0.456
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.