Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CRNKL1Crooked neck pre-mRNA splicing factor 1. (684 aa)    
Predicted Functional Partners:
XAB2
XPA binding protein 2.
   
0.999
SNW1
SNW domain containing 1.
  
 0.999
BUD31
BUD31 homolog.
    
 0.998
AQR
Aquarius intron-binding spliceosomal factor.
   
 0.998
SYF2
SYF2 pre-mRNA splicing factor.
    
 0.998
LOC102356421
ISY1 splicing factor homolog.
   
 0.997
PPIE
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
   
 0.997
PRPF19
Pre-mRNA processing factor 19.
   
 0.995
ZNF830
zf-C2H2_jaz domain-containing protein.
   
 
 0.992
CDC5L
Cell division cycle 5 like.
   
 0.991
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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