STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CACHD1Cache domain containing 1. (1137 aa)    
Predicted Functional Partners:
TMEM259
Transmembrane protein 259.
      
 0.691
LOC102358736
Sphingomyelin phosphodiesterase, acid-like 3B.
      
 0.685
EMC1
ER membrane protein complex subunit 1.
      
 0.611
STT3A
STT3 oligosaccharyltransferase complex catalytic subunit A.
    
 
 0.599
GGCX
Gamma-glutamyl carboxylase.
      
 0.594
CACNB4
Calcium channel, voltage-dependent, beta 4a subunit.
   
 0.594
CACNB1
Calcium voltage-gated channel auxiliary subunit beta 1.
   
 0.594
CACNB2
Calcium voltage-gated channel auxiliary subunit beta 2.
   
 0.594
CACNB3
Calcium voltage-gated channel auxiliary subunit beta 3.
   
 0.594
CAPNS1
Calpain small subunit 1.
      
 0.575
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.