H2ZV64_LATCH protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2ZV64_LATCH

Uncharacterized protein. (458 aa)

Predicted Functional Partners:

ACOT8

0.946

CSAD

0.915

GADL1

0.915

GAD1

0.907

GGT5

0.904

LOC102358421

0.903

LOC102360922

0.901

LOC102363365

0.901

BAAT

0.901

LOC102347571

0.900

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACOT8	BAAT	ENSLACP00000021285	ENSLACP00000023643	Acyl-CoA thioesterase 8.	Uncharacterized protein.	0.977
ACOT8	H2ZV64_LATCH	ENSLACP00000021285	ENSLACP00000001285	Acyl-CoA thioesterase 8.	Uncharacterized protein.	0.946
ACOT8	LOC102363365	ENSLACP00000021285	ENSLACP00000022978	Acyl-CoA thioesterase 8.	Uncharacterized protein.	0.946
BAAT	ACOT8	ENSLACP00000023643	ENSLACP00000021285	Uncharacterized protein.	Acyl-CoA thioesterase 8.	0.977
BAAT	CSAD	ENSLACP00000023643	ENSLACP00000018991	Uncharacterized protein.	Uncharacterized protein.	0.915
BAAT	GAD1	ENSLACP00000023643	ENSLACP00000014477	Uncharacterized protein.	Glutamate decarboxylase 1.	0.907
BAAT	GADL1	ENSLACP00000023643	ENSLACP00000023283	Uncharacterized protein.	Glutamate decarboxylase like 1.	0.915
BAAT	GGT5	ENSLACP00000023643	ENSLACP00000016353	Uncharacterized protein.	Gamma-glutamyltransferase 5a.	0.904
BAAT	H2ZV64_LATCH	ENSLACP00000023643	ENSLACP00000001285	Uncharacterized protein.	Uncharacterized protein.	0.901
BAAT	LOC102347571	ENSLACP00000023643	ENSLACP00000016517	Uncharacterized protein.	Uncharacterized protein.	0.900
BAAT	LOC102358421	ENSLACP00000023643	ENSLACP00000005633	Uncharacterized protein.	Uncharacterized protein.	0.903
BAAT	LOC102360922	ENSLACP00000023643	ENSLACP00000005564	Uncharacterized protein.	Flavin-containing monooxygenase.	0.901
BAAT	LOC102363365	ENSLACP00000023643	ENSLACP00000022978	Uncharacterized protein.	Uncharacterized protein.	0.901
CSAD	BAAT	ENSLACP00000018991	ENSLACP00000023643	Uncharacterized protein.	Uncharacterized protein.	0.915
CSAD	GADL1	ENSLACP00000018991	ENSLACP00000023283	Uncharacterized protein.	Glutamate decarboxylase like 1.	0.901
CSAD	GGT5	ENSLACP00000018991	ENSLACP00000016353	Uncharacterized protein.	Gamma-glutamyltransferase 5a.	0.908
CSAD	H2ZV64_LATCH	ENSLACP00000018991	ENSLACP00000001285	Uncharacterized protein.	Uncharacterized protein.	0.915
CSAD	LOC102347571	ENSLACP00000018991	ENSLACP00000016517	Uncharacterized protein.	Uncharacterized protein.	0.904
CSAD	LOC102360922	ENSLACP00000018991	ENSLACP00000005564	Uncharacterized protein.	Flavin-containing monooxygenase.	0.907
CSAD	LOC102363365	ENSLACP00000018991	ENSLACP00000022978	Uncharacterized protein.	Uncharacterized protein.	0.915