STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USF1Upstream transcription factor 1. (293 aa)    
Predicted Functional Partners:
USF2
Upstream transcription factor 2, c-fos interacting.
  
 
0.987
SP1
Sp1 transcription factor.
    
 0.841
LOC102352539
Uncharacterized protein.
    
 0.840
GTF2I
General transcription factor IIi.
    
 
 0.787
CREBBP
CREB binding protein.
    
 0.728
TYR
Tyrosinase.
    
 0.715
EP300
E1A binding protein p300.
    
 0.643
BATF
Basic leucine zipper ATF-like transcription factor.
    
 
 0.643
CTCF
CCCTC-binding factor.
    
 0.629
LOC102359416
Uncharacterized protein.
      
 0.602
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.