STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPTXRNeuronal pentraxin receptor. (677 aa)    
Predicted Functional Partners:
PHC2
Polyhomeotic homolog 2.
    
 0.972
PHC1
Polyhomeotic homolog 1.
    
 0.972
RNF2
Ring finger protein 2.
    
 0.963
RING1
Ring finger protein 1.
    
 0.961
PCGF2
Polycomb group ring finger 2.
    
 0.952
BMI1
Bmi1 polycomb ring finger oncogene 1b.
    
 0.942
BCOR
BCL6 corepressor.
    
 0.907
CBX4
Chromobox 4.
    
0.901
PCGF5
Polycomb group ring finger 5.
    
 0.882
CBX8
Chromobox 8.
    
0.880
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.