Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102354227Arm_2 domain-containing protein. (317 aa)    
Predicted Functional Partners:
TRAK2
Trafficking kinesin protein 2.
     
 0.714
POP1
POP1 homolog, ribonuclease P/MRP subunit.
    
 
 0.704
IPO4
Importin 4.
    
 
 0.648
HTT
Huntingtin.
   
 0.643
CDCP1
CUB domain containing protein 1.
      
 0.641
ARMC7
Armadillo repeat containing 7.
      
 0.614
ARMC1
Armadillo repeat-containing protein 1.
      
 0.613
ARMC8
Armadillo repeat containing 8.
     
 0.609
TRIM16
Tripartite motif containing 16.
    
 0.607
H2ZU41_LATCH
Uncharacterized protein.
    
 0.606
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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