STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH18Cadherin 18; Cadherins are calcium-dependent cell adhesion proteins. (791 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta 1.
    
 0.721
JUP
Junction plakoglobin.
    
 0.683
CTNND1
Catenin delta 1.
   
 0.646
ARVCF
ARVCF delta catenin family member.
   
 0.646
TMEM215
Transmembrane protein 215.
   
    0.582
CDH12
Cadherin 12; Cadherins are calcium-dependent cell adhesion proteins.
     
0.572
SH3BP5L
SH3 binding domain protein 5 like.
      
 0.551
CDH16
Cadherin 16, KSP-cadherin.
     
0.544
LOC102346231
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
  
0.533
CDH1
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
  
  
 
0.526
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.