STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTCHD1Patched domain containing 1. (902 aa)    
Predicted Functional Partners:
RIPK4
Receptor interacting serine/threonine kinase 4.
      
 0.768
FICD
FIC domain containing.
      
 0.746
PLAGL2
PLAG1 like zinc finger 2.
      
 0.721
NWD2
NACHT and WD repeat domain containing 2.
      
 0.701
PANX2
Pannexin; Structural component of the gap junctions and the hemichannels; Belongs to the pannexin family.
      
 0.664
ENC1
Ectodermal-neural cortex 1.
      
 0.644
GPR85
G protein-coupled receptor 85.
      
 0.643
RAG2
Recombination activating 2.
      
 0.633
SVEP1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
      
 0.579
MYH6
Myosin heavy chain 6; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.572
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.