STRINGSTRING
COL13A1 protein (Latimeria chalumnae) - STRING interaction network
"COL13A1" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL13A1Uncharacterized protein (633 aa)    
Predicted Functional Partners:
COL25A1
Collagen, type XXV, alpha 1 (301 aa)
   
          0.527
C1QB
Complement component 1, q subcomponent, B chain (333 aa)
   
          0.527
ENSLACG00000007097
Uncharacterized protein (224 aa)
   
          0.527
ENSLACG00000004396
Uncharacterized protein (342 aa)
   
          0.527
C1QTNF2
C1q and tumor necrosis factor related protein 2 (297 aa)
   
          0.526
COLQ
Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase (452 aa)
   
          0.525
COL26A1
Uncharacterized protein (321 aa)
   
          0.521
C1QTNF7
C1q and tumor necrosis factor related protein 7 (291 aa)
   
          0.517
ENSLACG00000016835
Uncharacterized protein (226 aa)
   
          0.502
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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