STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTR1F5-hydroxytryptamine (serotonin) receptor 1Fb. (365 aa)    
Predicted Functional Partners:
GBE1
1,4-alpha-glucan branching enzyme 1.
      
 0.694
SH3RF3
SH3 domain containing ring finger 3.
     
 0.612
HTR5A
5-hydroxytryptamine receptor 5A.
   
 
0.594
H3B6L2_LATCH
G_PROTEIN_RECEP_F1_2 domain-containing protein.
   
 
0.594
SLITRK4
SLIT and NTRK like family member 4.
     
 0.583
AKAP17A
A-kinase anchoring protein 17A.
      
 0.570
GNB4
G protein subunit beta 4.
    
 0.558
GNB1
G protein subunit beta 1.
    
 0.558
ASMTL
Acetylserotonin O-methyltransferase like.
      
 0.556
LOC102351528
Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
      
 0.555
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.