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SEPSECS protein (Latimeria chalumnae) - STRING interaction network
"SEPSECS" - Sep in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEPSECSSep (O-phosphoserine) tRNA-Sec (selenocysteine) tRNA synthase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (492 aa)    
Predicted Functional Partners:
SEPHS2
Selenophosphate synthetase 2 (338 aa)
   
 
  0.969
SEPHS1
Selenophosphate synthetase 1 (392 aa)
   
 
  0.969
PSTK
phosphoseryl-tRNA kinase (350 aa)
     
 
  0.954
ZNF217
Zinc finger protein 217 (1031 aa)
     
      0.843
CAD
Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (2203 aa)
     
 
  0.810
AGXT2L2
Alanine-glyoxylate aminotransferase 2-like 2 (462 aa)
   
  0.733
AGXT2L1
Alanine-glyoxylate aminotransferase 2-like 1 (524 aa)
   
  0.733
ABAT
4-aminobutyrate aminotransferase (490 aa)
   
  0.733
AGXT2
Alanine--glyoxylate aminotransferase 2 (516 aa)
   
  0.733
GTPBP2
GTP binding protein 2 (587 aa)
       
      0.667
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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