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STRINGSTRING
NID1 protein (Latimeria chalumnae) - STRING interaction network
"NID1" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NID1Uncharacterized protein; Nidogen 1 (446 aa)    
Predicted Functional Partners:
HSPG2
Heparan sulfate proteoglycan 2 (2595 aa)
     
 
  0.885
FN1
Uncharacterized protein; Fibronectin 1 (2295 aa)
     
   
  0.795
LAMC3
Laminin, gamma 3 (1573 aa)
     
 
  0.784
LAMC1
Laminin, gamma 1 (formerly LAMB2) (1472 aa)
     
 
  0.784
AGRN
Agrin (1882 aa)
     
 
  0.676
HLX
H2.0-like homeobox (384 aa)
           
  0.642
LYST
Lysosomal trafficking regulator (3705 aa)
     
   
  0.631
PCDH7
Protocadherin 7 (1051 aa)
           
  0.630
FBLN2
Fibulin 2 (1176 aa)
     
 
  0.617
ENSLACG00000005555
Uncharacterized protein (1114 aa)
     
 
  0.617
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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