Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRP1BUncharacterized protein. (1007 aa)    
Predicted Functional Partners:
H3ABR4_LATCH
Uncharacterized protein.
 
     0.919
H3A5Z1_LATCH
Uncharacterized protein.
 
    
0.910
LRIG1
Leucine rich repeats and immunoglobulin like domains 1.
   
 0.679
LDLRAP1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.658
DAB1
DAB adaptor protein 1.
    
 0.643
APP
Amyloid beta precursor protein.
    
 0.629
RET
Ret proto-oncogene; Belongs to the protein kinase superfamily. Tyr protein kinase family.
     
 0.616
FZD6
Frizzled class receptor 6; Belongs to the G-protein coupled receptor Fz/Smo family.
    
 0.616
THBS1
Thrombospondin 1.
    
 0.604
AXIN1
Axin 1.
    
 0.595
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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