STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP8Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (469 aa)    
Predicted Functional Partners:
CEBPZ
CCAAT enhancer binding protein zeta.
   
   0.973
RBM28
Uncharacterized protein.
   
 
 0.963
RPF2
Ribosome production factor 2 homolog.
   
   0.961
RBM34
RNA binding motif protein 34.
   
   0.961
PUM3
Pumilio RNA binding family member 3.
   
 
 0.960
BRIX1
Biogenesis of ribosomes BRX1.
   
 
 0.956
EBNA1BP2
EBNA1 binding protein 2.
   
   0.953
NOL12
Uncharacterized protein.
   
   0.952
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 
 0.947
SIRT1
Sirtuin 1.
    
 0.938
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.