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RRP8 protein (Latimeria chalumnae) - STRING interaction network
"RRP8" - Ribosomal RNA processing 8, methyltransferase, homolog in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP8Ribosomal RNA processing 8, methyltransferase, homolog (yeast) (469 aa)    
Predicted Functional Partners:
NSUN6
NOP2/Sun RNA methyltransferase family member 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (469 aa)
     
 
  0.963
FTSJ3
FtsJ homolog 3 (E. coli) (710 aa)
     
 
  0.959
NOP14
NOP14 nucleolar protein (872 aa)
     
 
  0.935
KIAA0020
Pumilio RNA binding family member 3; KIAA0020 (641 aa)
     
 
  0.925
GTPBP4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit (634 aa)
 
 
      0.923
RBM28
RNA binding motif protein 28 (559 aa)
     
 
  0.923
WDR12
WD repeat domain 12 (339 aa)
     
   
  0.914
DDX27
DEAD-box helicase 27; DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family (785 aa)
     
 
  0.911
DDX52
DExD-box helicase 52; DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 (615 aa)
     
 
  0.904
WBSCR22
BUD23, rRNA methyltransferase and ribosome maturation factor; Williams Beuren syndrome chromosome region 22 (282 aa)
     
   
  0.900
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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