GNL3 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GNL3

G protein nucleolar 3. (564 aa)

Predicted Functional Partners:

GNL2

0.995

EBNA1BP2

0.992

PES1

0.992

NOP56

0.989

NOP58

0.979

GTPBP4

0.977

RPF2

0.977

GNL3L

0.975

NOC2L

0.974

MRTO4

0.974

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EBNA1BP2	GNL2	ENSLACP00000002641	ENSLACP00000019325	EBNA1 binding protein 2.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.973
EBNA1BP2	GNL3	ENSLACP00000002641	ENSLACP00000001404	EBNA1 binding protein 2.	G protein nucleolar 3.	0.992
EBNA1BP2	GNL3L	ENSLACP00000002641	ENSLACP00000011578	EBNA1 binding protein 2.	G protein nucleolar 3 like.	0.983
EBNA1BP2	GTPBP4	ENSLACP00000002641	ENSLACP00000001622	EBNA1 binding protein 2.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.988
EBNA1BP2	MRTO4	ENSLACP00000002641	ENSLACP00000021797	EBNA1 binding protein 2.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.990
EBNA1BP2	NOC2L	ENSLACP00000002641	ENSLACP00000019791	EBNA1 binding protein 2.	Uncharacterized protein.	0.995
EBNA1BP2	NOP56	ENSLACP00000002641	ENSLACP00000012824	EBNA1 binding protein 2.	NOP56 ribonucleoprotein.	0.995
EBNA1BP2	NOP58	ENSLACP00000002641	ENSLACP00000016895	EBNA1 binding protein 2.	NOP58 ribonucleoprotein.	0.993
EBNA1BP2	PES1	ENSLACP00000002641	ENSLACP00000019460	EBNA1 binding protein 2.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
EBNA1BP2	RPF2	ENSLACP00000002641	ENSLACP00000004432	EBNA1 binding protein 2.	Ribosome production factor 2 homolog.	0.996
GNL2	EBNA1BP2	ENSLACP00000019325	ENSLACP00000002641	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	EBNA1 binding protein 2.	0.973
GNL2	GNL3	ENSLACP00000019325	ENSLACP00000001404	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	G protein nucleolar 3.	0.995
GNL2	GNL3L	ENSLACP00000019325	ENSLACP00000011578	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	G protein nucleolar 3 like.	0.995
GNL2	GTPBP4	ENSLACP00000019325	ENSLACP00000001622	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.996
GNL2	MRTO4	ENSLACP00000019325	ENSLACP00000021797	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.993
GNL2	NOC2L	ENSLACP00000019325	ENSLACP00000019791	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Uncharacterized protein.	0.944
GNL2	NOP56	ENSLACP00000019325	ENSLACP00000012824	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	NOP56 ribonucleoprotein.	0.930
GNL2	NOP58	ENSLACP00000019325	ENSLACP00000016895	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	NOP58 ribonucleoprotein.	0.946
GNL2	PES1	ENSLACP00000019325	ENSLACP00000019460	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.993
GNL2	RPF2	ENSLACP00000019325	ENSLACP00000004432	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Ribosome production factor 2 homolog.	0.994