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STRINGSTRING
USP48 protein (Latimeria chalumnae) - STRING interaction network
"USP48" - Ubiquitin specific peptidase 48 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP48Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family (1043 aa)    
Predicted Functional Partners:
KXD1
annotation not available (231 aa)
       
 
  0.852
UBA6
Ubiquitin-like modifier activating enzyme 6 (1027 aa)
     
 
  0.804
SECISBP2L
SECIS binding protein 2-like (1080 aa)
           
  0.785
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L-like (548 aa)
     
   
  0.769
TRIP12
Thyroid hormone receptor interactor 12 (2023 aa)
     
 
  0.762
ENSLACG00000009931
annotation not available (77 aa)
     
 
  0.726
UBL7
Ubiquitin-like 7 (297 aa)
     
 
  0.708
RPS27A
Ribosomal protein S27a (156 aa)
     
 
  0.691
UBE4B
Ubiquitination factor E4B (1348 aa)
     
 
  0.687
ETF1
Eukaryotic translation termination factor 1 (437 aa)
           
  0.678
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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