Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102352186Vitellogenin domain-containing protein. (463 aa)    
Predicted Functional Partners:
H2ZS43_LATCH
DUF1943 domain-containing protein.
 
     0.944
LOC102365063
Apolipoprotein A-IV b, tandem duplicate 2.
   
 0.935
H2ZXK1_LATCH
Uncharacterized protein.
 
     0.910
MTTP
Microsomal triglyceride transfer protein.
   
 0.815
LOC102350159
Vitellogenin domain-containing protein.
   
 0.815
AHSG
Alpha 2-HS glycoprotein.
   
 
 0.662
FABP1
Fatty acid binding protein 1.
   
 
 0.640
LOC102365332
Apolipoprotein Ea.
   
 0.640
APOH
Apolipoprotein H.
   
 
 0.637
HSP90B1
Heat shock protein 90 beta family member 1.
    
 0.623
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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