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ATG12 protein (Latimeria chalumnae) - STRING interaction network
"ATG12" - Ubiquitin-like protein ATG12 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation (145 aa)    
Predicted Functional Partners:
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation (275 aa)
     
  0.998
ATG3
Autophagy-related protein 3; APG3 autophagy 3-like (314 aa)
     
  0.997
ATG10
Autophagy related 10 (248 aa)
     
  0.989
ATG7
Autophagy related 7 (593 aa)
     
 
  0.986
GABARAPL2
GABA(A) receptor-associated protein-like 2; Belongs to the ATG8 family (117 aa)
     
  0.970
ENSLACG00000006869
annotation not available (117 aa)
     
  0.962
BECN1
Beclin 1, autophagy related (447 aa)
     
 
  0.956
ATG16L2
Uncharacterized protein; Autophagy related 16-like 2 (S. cerevisiae) (340 aa)
       
  0.933
ATG16L1
Autophagy related 16-like 1 (S. cerevisiae) (597 aa)
       
 
  0.918
ENSLACG00000012069
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle (854 aa)
       
 
  0.909
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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