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SCAF11 protein (Latimeria chalumnae) - STRING interaction network
"SCAF11" - SR-related CTD-associated factor 11 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF11SR-related CTD-associated factor 11 (1500 aa)    
Predicted Functional Partners:
NEDD1
Neural precursor cell expressed, developmentally down-regulated 1 (671 aa)
     
 
  0.637
TUBGCP2
Tubulin, gamma complex associated protein 2; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (908 aa)
     
      0.611
TUBGCP4
Tubulin, gamma complex associated protein 4; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (666 aa)
     
      0.602
TUBGCP6
Tubulin, gamma complex associated protein 6 (1767 aa)
     
      0.597
TUBGCP3
Tubulin, gamma complex associated protein 3; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (905 aa)
     
      0.597
TUBGCP5
Tubulin, gamma complex associated protein 5; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (1027 aa)
     
      0.593
MZT1
Mitotic spindle organizing protein 1 (76 aa)
       
      0.590
NME7
NME/NM23 family member 7 (376 aa)
       
      0.590
PNISR
PNN-interacting serine/arginine-rich protein (809 aa)
     
   
  0.548
MCM3AP
Minichromosome maintenance complex component 3 associated protein (1957 aa)
     
   
  0.525
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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