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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
SCAF11 protein (Latimeria chalumnae) - STRING interaction network
"SCAF11" - SR-related CTD-associated factor 11 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF11SR-related CTD-associated factor 11 (1500 aa)    
Predicted Functional Partners:
NIPBL
Nipped-B homolog (Drosophila) (2707 aa)
     
   
  0.870
STAG2
Stromal antigen 2 (1284 aa)
     
   
  0.859
THOC2
THO complex 2 (1564 aa)
     
        0.853
RSF1
Remodeling and spacing factor 1 (1432 aa)
     
   
  0.778
SMC5
Structural maintenance of chromosomes 5 (1096 aa)
     
        0.772
ATRX
ATRX, chromatin remodeler; Alpha thalassemia/mental retardation syndrome X-linked (2488 aa)
     
      0.705
ENSLACG00000008748
Uncharacterized protein (679 aa)
     
      0.705
PNISR
PNN-interacting serine/arginine-rich protein (809 aa)
     
   
  0.700
PHF3
PHD finger protein 3 (1992 aa)
     
   
  0.687
SUGP2
Uncharacterized protein; SURP and G patch domain containing 2 (1174 aa)
     
   
  0.677
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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