STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF11SR-related CTD associated factor 11. (1500 aa)    
Predicted Functional Partners:
SCAF4
SR-related CTD associated factor 4.
   
 
 0.766
NIPBL
Nipped-B protein.
   
  
 0.720
THOC2
THO complex 2.
   
    0.706
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.692
BCLAF1
BCL2 associated transcription factor 1.
  
    0.671
PNISR
PNN interacting serine and arginine rich protein.
   
  
 0.587
PDS5A
PDS5 cohesin associated factor A.
   
  
 0.561
PCMTD1
Protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1.
      
 0.555
SMCHD1
Structural maintenance of chromosomes flexible hinge domain containing 1.
   
    0.535
SMC5
AAA_23 domain-containing protein.
   
    0.533
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.