STRINGSTRING
SMYD1 protein (Latimeria chalumnae) - STRING interaction network
"SMYD1" - SET and MYND domain containing 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMYD1SET and MYND domain containing 1 (479 aa)    
Predicted Functional Partners:
BRPF1
Bromodomain and PHD finger containing, 1 (1215 aa)
     
  0.718
BRD1
Bromodomain containing 1 (1190 aa)
     
  0.718
BRPF3
Bromodomain and PHD finger containing, 3 (1194 aa)
     
  0.718
ASH2L
Ash2 (absent, small, or homeotic)-like (Drosophila) (448 aa)
     
  0.696
ZNF367
Zinc finger protein 367 (340 aa)
     
  0.692
RBBP5
Retinoblastoma binding protein 5 (494 aa)
     
  0.663
EED
Embryonic ectoderm development (466 aa)
     
  0.644
KXD1
Ubiquitin A-52 residue ribosomal protein fusion product 1 (231 aa)
       
  0.620
UBA52
Uncharacterized protein (128 aa)
       
  0.620
PPIE
Peptidylprolyl isomerase E (cyclophilin E); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (302 aa)
     
 
  0.614
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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