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STRINGSTRING
SMYD1 protein (Latimeria chalumnae) - STRING interaction network
"SMYD1" - SET and MYND domain containing 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMYD1SET and MYND domain containing 1 (479 aa)    
Predicted Functional Partners:
UNC45B
Unc-45 homolog B (C. elegans) (676 aa)
     
   
  0.919
ZNF367
Zinc finger protein 367 (340 aa)
     
 
  0.863
UBOX5
U-box domain containing 5 (530 aa)
     
 
  0.831
THNSL2
Threonine synthase-like 2 (S. cerevisiae) (478 aa)
           
  0.785
NACA
Nascent polypeptide-associated complex alpha subunit (290 aa)
     
 
  0.771
ZNF366
Zinc finger protein 366 (686 aa)
     
 
  0.732
MYOM2
Uncharacterized protein; Myomesin 2 (962 aa)
     
   
  0.722
TTN
Titin, tandem duplicate 2; Titin (21846 aa)
     
   
  0.717
UNC45A
Unc-45 homolog A (C. elegans) (934 aa)
     
   
  0.713
FBXL17
F-box and leucine-rich repeat protein 17 (316 aa)
     
 
  0.706
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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