Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H2ZVT1_LATCHUncharacterized protein. (821 aa)    
Predicted Functional Partners:
VARS1
Valyl-tRNA synthetase.
      
 0.561
GPANK1
G-patch domain and ankyrin repeats 1.
      
 0.455
H3A0H7_LATCH
Uncharacterized protein.
      
 0.454
DPY19L4
Dpy-19 like 4.
      
 0.454
NOC4L
Nucleolar complex associated 4 homolog.
      
 0.454
HABP4
Hyaluronan binding protein 4.
      
 0.453
TMEM9B
TMEM9 domain family member B.
      
 0.450
CCNQ
Cyclin Q; Belongs to the cyclin family.
      
 0.447
H2ZS06_LATCH
Uncharacterized protein.
  
     0.444
GTF2H4
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
      
 0.433
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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