H2ZVW5_LATCH protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H2ZVW5_LATCH

DUF659 domain-containing protein. (416 aa)

Predicted Functional Partners:

MGA

0.790

TFDP2

0.703

TFDP1

0.703

MAX

0.668

L3MBTL2

0.653

MBTD1

0.653

H3ATG0_LATCH

0.643

PCGF6

0.643

YAF2

0.624

RYBP

0.624

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZVW5_LATCH	H3ATG0_LATCH	ENSLACP00000001536	ENSLACP00000012931	DUF659 domain-containing protein.	Uncharacterized protein.	0.643
H2ZVW5_LATCH	L3MBTL2	ENSLACP00000001536	ENSLACP00000008132	DUF659 domain-containing protein.	L3MBTL histone methyl-lysine binding protein 2.	0.653
H2ZVW5_LATCH	MAX	ENSLACP00000001536	ENSLACP00000018943	DUF659 domain-containing protein.	MYC associated factor X.	0.668
H2ZVW5_LATCH	MBTD1	ENSLACP00000001536	ENSLACP00000021883	DUF659 domain-containing protein.	Mbt domain containing 1.	0.653
H2ZVW5_LATCH	MGA	ENSLACP00000001536	ENSLACP00000002928	DUF659 domain-containing protein.	MAX dimerization protein MGA.	0.790
H2ZVW5_LATCH	PCGF6	ENSLACP00000001536	ENSLACP00000013706	DUF659 domain-containing protein.	Polycomb group ring finger 6.	0.643
H2ZVW5_LATCH	RYBP	ENSLACP00000001536	ENSLACP00000017401	DUF659 domain-containing protein.	RING1 and YY1 binding protein.	0.624
H2ZVW5_LATCH	TFDP1	ENSLACP00000001536	ENSLACP00000012618	DUF659 domain-containing protein.	Transcription factor.	0.703
H2ZVW5_LATCH	TFDP2	ENSLACP00000001536	ENSLACP00000007039	DUF659 domain-containing protein.	Transcription factor.	0.703
H2ZVW5_LATCH	YAF2	ENSLACP00000001536	ENSLACP00000006913	DUF659 domain-containing protein.	YY1 associated factor 2.	0.624
H3ATG0_LATCH	H2ZVW5_LATCH	ENSLACP00000012931	ENSLACP00000001536	Uncharacterized protein.	DUF659 domain-containing protein.	0.643
H3ATG0_LATCH	L3MBTL2	ENSLACP00000012931	ENSLACP00000008132	Uncharacterized protein.	L3MBTL histone methyl-lysine binding protein 2.	0.979
H3ATG0_LATCH	MAX	ENSLACP00000012931	ENSLACP00000018943	Uncharacterized protein.	MYC associated factor X.	0.962
H3ATG0_LATCH	MBTD1	ENSLACP00000012931	ENSLACP00000021883	Uncharacterized protein.	Mbt domain containing 1.	0.843
H3ATG0_LATCH	MGA	ENSLACP00000012931	ENSLACP00000002928	Uncharacterized protein.	MAX dimerization protein MGA.	0.904
H3ATG0_LATCH	RYBP	ENSLACP00000012931	ENSLACP00000017401	Uncharacterized protein.	RING1 and YY1 binding protein.	0.878
H3ATG0_LATCH	TFDP1	ENSLACP00000012931	ENSLACP00000012618	Uncharacterized protein.	Transcription factor.	0.880
H3ATG0_LATCH	TFDP2	ENSLACP00000012931	ENSLACP00000007039	Uncharacterized protein.	Transcription factor.	0.831
H3ATG0_LATCH	YAF2	ENSLACP00000012931	ENSLACP00000006913	Uncharacterized protein.	YY1 associated factor 2.	0.878
L3MBTL2	H2ZVW5_LATCH	ENSLACP00000008132	ENSLACP00000001536	L3MBTL histone methyl-lysine binding protein 2.	DUF659 domain-containing protein.	0.653