STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
REEP5Receptor expression-enhancing protein. (189 aa)    
Predicted Functional Partners:
REEP6
Receptor expression-enhancing protein.
    
 
 0.939
RABAC1
PRA1 family protein.
   
 
 0.870
FAM241A
Family with sequence similarity 241 member A.
    
   0.817
PFAS
Phosphoribosylformylglycinamidine synthase.
      
 0.789
SLC25A46
Solute carrier family 25 member 46; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.760
ARL6IP1
ADP-ribosylation factor-like 6 interacting protein 1.
    
 
 0.723
RPS15A
Uncharacterized protein.
    
 
 0.723
RETREG3
Reticulophagy regulator family member 3.
    
 
 0.631
PTER
Phosphotriesterase related.
    
 
 0.594
TMCO1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
    0.585
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.