Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FGFR1OPFGFR1 oncogene partner. (467 aa)    
Predicted Functional Partners:
CEP350
Centrosomal protein 350.
    
 
 0.979
CEP19
Centrosomal protein 19.
    
 
 0.974
PPP2R3C
Protein phosphatase 2 regulatory subunit B''gamma.
    
 
 0.964
CEP78
Centrosomal protein 78.
    
   0.928
PACS1
Phosphofurin acidic cluster sorting protein 1.
    
   0.905
H3B7C5_LATCH
Uncharacterized protein.
    
   0.905
RABL2A
RAB, member of RAS oncogene family-like 2.
   
 0.836
MAPRE1
Microtubule associated protein RP/EB family member 1.
    
 
 0.823
LOC102350821
Serine/threonine-protein phosphatase.
    
 
 0.777
PPP2CA
Serine/threonine-protein phosphatase.
    
 
 0.777
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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