• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
CCDC86 protein (Latimeria chalumnae) - STRING interaction network
"CCDC86" - Coiled-coil domain containing 86 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC86Coiled-coil domain containing 86 (356 aa)    
Predicted Functional Partners:
NIP7
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly (180 aa)
     
        0.963
RRS1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly (329 aa)
     
        0.855
NHP2
NHP2 ribonucleoprotein (155 aa)
     
        0.852
MRTO4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (238 aa)
     
        0.851
NHP2L1
Small nuclear ribonucleoprotein 13; NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (142 aa)
     
        0.709
NOP56
NOP56 ribonucleoprotein (563 aa)
     
      0.689
NOP10
NOP10 ribonucleoprotein (64 aa)
     
        0.689
RPP38
Ribonuclease P/MRP 38kDa subunit (291 aa)
     
        0.659
SLC44A1
Solute carrier family 44 (choline transporter), member 1; Belongs to the CTL (choline transporter-like) family (719 aa)
           
  0.640
CD302
Uncharacterized protein; CD302 molecule (178 aa)
           
  0.583
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
Server load: low (12%) [HD]